MolNFT v1 · #49466 · protein
Structure of a MACPF/PERFORIN-like protein
2QP2 · Unknown protein: “Structure of a MACPF/PERFORIN-like protein”. X-ray diffraction, 1 ligand (CA), 5 pockets (best druggability 0.51). MolNFT v1 #49466 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2QP2
- Type
- protein
- Length
- 498 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Unknown protein
- UniProt
- Q7N6X0
- Ligands
- CA
- Pockets
- 5 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Unknown protein | protein | 498 | 30% helix, 29% strand | Q7N6X0 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 141 | 0.51 | 0.79 | 31 | empty |
| 2 | 98 | 0.43 | 0.79 | 19 | empty |
| 3 | 62 | 0.42 | 0.81 | 18 | empty |
| 4 | 53 | 0.41 | 0.83 | 13 | empty |
| 5 | 91 | 0.34 | 0.74 | 18 | empty |
Compared structures
- 2QP2 · Structure of a MACPF/perforin-like protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7N6X0
- Elsewhere: RCSB PDB 2QP2 · PDBe 2QP2 · UniProt Q7N6X0
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