MolNFT v1 · #49327 · protein

Structure of the SAM domain of human ephrin type-B receptor 4

2QKQ: “Structure of the SAM domain of human ephrin type-B receptor 4”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #49327 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2QKQ
Type: protein
Length: 122 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ephrin type-B receptor 4
EC: 2.7.10.1
UniProt: P54760
Ligands: CL

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ephrin type-B receptor 4 (EC 2.7.10.1)	protein	61	62% helix, 0% strand	P54760

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 317 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

2QKQ · Structure of the SAM Domain of Human Ephrin Type-B Receptor 4 · the same entry in another collection · chain A against A, TM-score 1.00
P54760 · AlphaFold monomer V2.0 prediction for ephrin type-B receptor 4 (P54760) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54760
Elsewhere: RCSB PDB 2QKQ · PDBe 2QKQ · UniProt P54760

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