MolNFT v1 · #49195 · protein
Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from bacillus halodurans, northeast structural genomics consortium target BHR41.
2QGN · TRNA DELTA(2)-isopentenylpyrophosphate transferase: “Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from bacillus halodurans, northeast…”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability…
- PDB
- 2QGN
- Type
- protein
- Length
- 244 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA DELTA(2)-isopentenylpyrophosphate transferase
- EC
- 2.5.1.8
- UniProt
- Q9KAC3
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA DELTA(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) | protein | 244 | 53% helix, 13% strand | Q9KAC3 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 505 | 0.73 | 0.82 | 54 | SO4 |
| 2 | 79 | 0.39 | 0.78 | 18 | empty |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 2QGN · Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from Bacillus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9KAC3 · AlphaFold monomer V2.0 prediction for tRNA dimethylallyltransferase (Q9KAC3) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KAC3
- Elsewhere: RCSB PDB 2QGN · PDBe 2QGN · UniProt Q9KAC3
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