Research workbench
Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from bacillus halodurans, northeast structural genomics consortium target BHR41.
Analyse Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QGN
- Type
- protein
- Length
- 244 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA DELTA(2)-isopentenylpyrophosphate transferase
- EC
- 2.5.1.8
- UniProt
- Q9KAC3
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA DELTA(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) | protein | 244 | 53% helix, 13% strand | Q9KAC3 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 505 | 0.73 | 0.82 | 54 | SO4 |
| 2 | 79 | 0.39 | 0.78 | 18 | empty |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 2QGN · Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from Bacillus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9KAC3 · AlphaFold monomer V2.0 prediction for tRNA dimethylallyltransferase (Q9KAC3) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KAC3
- Elsewhere: RCSB PDB 2QGN · PDBe 2QGN · UniProt Q9KAC3
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