MolNFT v1 · #48797 · protein
Ensemble refinement of the protein crystal structure of gene product from arabidopsis thaliana AT5G48480
2Q48 · Protein AT5G48480: “Ensemble refinement of the protein crystal structure of gene product from arabidopsis thaliana AT5G48480”. X-ray diffraction, 3 pockets (best druggability 0.55). MolNFT v1 #48797 on GenesisL1: 3D structure…
- PDB
- 2Q48
- Type
- protein
- Length
- 242 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein AT5G48480
- UniProt
- Q9LV66
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 24% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein AT5G48480 | protein | 120 | 24% helix, 36% strand | Q9LV66 |
| B | Protein AT5G48480 | protein | 122 | 24% helix, 36% strand | Q9LV66 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.55 | 0.86 | 17 | empty |
| 2 | 110 | 0.41 | 0.76 | 19 | empty |
| 3 | 59 | 0.28 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1981 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 2Q48 · Ensemble refinement of the protein crystal structure of gene product from Arabidopsis… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9LV66 · AlphaFold monomer V2.0 prediction for uncharacterized protein AT5G48480 (Q9LV66) · a predicted model of the same protein · chain B against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LV66
- Elsewhere: RCSB PDB 2Q48 · PDBe 2Q48 · UniProt Q9LV66
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