Research workbench
Ensemble refinement of the protein crystal structure of gene product from arabidopsis thaliana AT5G48480
Analyse Ensemble refinement of the protein crystal structure of gene product from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2Q48
- Type
- protein
- Length
- 242 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein AT5G48480
- UniProt
- Q9LV66
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 24% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein AT5G48480 | protein | 120 | 24% helix, 36% strand | Q9LV66 |
| B | Protein AT5G48480 | protein | 122 | 24% helix, 36% strand | Q9LV66 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.55 | 0.86 | 17 | empty |
| 2 | 110 | 0.41 | 0.76 | 19 | empty |
| 3 | 59 | 0.28 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1981 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 2Q48 · Ensemble refinement of the protein crystal structure of gene product from Arabidopsis… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9LV66 · AlphaFold monomer V2.0 prediction for uncharacterized protein AT5G48480 (Q9LV66) · a predicted model of the same protein · chain B against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LV66
- Elsewhere: RCSB PDB 2Q48 · PDBe 2Q48 · UniProt Q9LV66
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