MolNFT v1 · #48407 · protein
Crystal structure of yerb protein from bacillus subtilis. northeast structural genomics target SR586
2PSB: “Crystal structure of yerb protein from bacillus subtilis. northeast structural genomics target SR586”. X-ray diffraction, 1 pocket (best druggability 0.71). MolNFT v1 #48407 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2PSB
- Type
- protein
- Length
- 290 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yerb protein
- UniProt
- O34968
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yerb protein | protein | 290 | 14% helix, 41% strand | O34968 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.71 | 0.92 | 25 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 2PSB · Crystal structure of YerB protein from Bacillus subtilis. NorthEast Structural Genomics… · the same entry in another collection · chain A against A, TM-score 1.00
- O34968 · AlphaFold monomer V2.0 prediction for putative lipoprotein yerb (O34968) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34968
- Elsewhere: RCSB PDB 2PSB · PDBe 2PSB · UniProt O34968
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