Research workbench
Crystal structure of yerb protein from bacillus subtilis. northeast structural genomics target SR586
Analyse Crystal structure of yerb protein from bacillus subtilis. northeast structural… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PSB
- Type
- protein
- Length
- 290 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yerb protein
- UniProt
- O34968
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yerb protein | protein | 290 | 14% helix, 41% strand | O34968 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.71 | 0.92 | 25 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 2PSB · Crystal structure of YerB protein from Bacillus subtilis. NorthEast Structural Genomics… · the same entry in another collection · chain A against A, TM-score 1.00
- O34968 · AlphaFold monomer V2.0 prediction for putative lipoprotein yerb (O34968) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34968
- Elsewhere: RCSB PDB 2PSB · PDBe 2PSB · UniProt O34968
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