MolNFT v1 · #48214 · protein
The apo crystal structure of the glycyl-tRNA synthetase
2PME: “The apo crystal structure of the glycyl-tRNA synthetase”. X-ray diffraction, 6 pockets (best druggability 0.72). MolNFT v1 #48214 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2PME
- Type
- protein
- Length
- 521 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycyl-tRNA synthetase
- EC
- 6.1.1.14
- UniProt
- P41250
- Pockets
- 6 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycyl-tRNA synthetase (EC 6.1.1.14) | protein | 521 | 37% helix, 26% strand | P41250 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 888 | 0.72 | 0.77 | 76 | empty |
| 2 | 97 | 0.39 | 0.76 | 20 | empty |
| 3 | 91 | 0.38 | 0.76 | 21 | empty |
| 4 | 61 | 0.34 | 0.77 | 14 | empty |
| 5 | 72 | 0.32 | 0.75 | 19 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41250
- Elsewhere: RCSB PDB 2PME · PDBe 2PME · UniProt P41250
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