MolNFT v1 · #48028 · protein
The use of phase combination in the refinement of phosphoglycerate kinase at 2.5 ångströms resolution
2PGK: “The use of phase combination in the refinement of phosphoglycerate kinase at 2.5 ångströms resolution”. X-ray diffraction, 5 pockets (best druggability 0.69). MolNFT v1 #48028 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2PGK
- Type
- protein
- Length
- 408 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoglycerate kinase
- EC
- 2.7.2.3
- Pockets
- 5 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoglycerate kinase (EC 2.7.2.3) | protein | 408 | 39% helix, 20% strand | — |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 722 | 0.69 | 0.77 | 96 | empty |
| 2 | 749 | 0.69 | 0.77 | 88 | empty |
| 3 | 784 | 0.65 | 0.74 | 83 | empty |
| 4 | 370 | 0.57 | 0.76 | 69 | empty |
| 5 | 60 | 0.24 | 0.72 | 21 | empty |
Compared structures
- 2PGK · The use of phase combination in the refinement of phosphoglycerate kinase at 2.5… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2PGK · PDBe 2PGK
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