Research workbench
The use of phase combination in the refinement of phosphoglycerate kinase at 2.5 ångströms resolution
Analyse The use of phase combination in the refinement of phosphoglycerate kinase at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PGK
- Type
- protein
- Length
- 408 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoglycerate kinase
- EC
- 2.7.2.3
- Pockets
- 5 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoglycerate kinase (EC 2.7.2.3) | protein | 408 | 39% helix, 20% strand | — |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 722 | 0.69 | 0.77 | 96 | empty |
| 2 | 749 | 0.69 | 0.77 | 88 | empty |
| 3 | 784 | 0.65 | 0.74 | 83 | empty |
| 4 | 370 | 0.57 | 0.76 | 69 | empty |
| 5 | 60 | 0.24 | 0.72 | 21 | empty |
Compared structures
- 2PGK · The use of phase combination in the refinement of phosphoglycerate kinase at 2.5… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2PGK · PDBe 2PGK
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