MolNFT v1 · #47839 · protein

Crystal structure of an amidohydrolase from an environmental sample of sargasso sea

2PAJ · Putative CYTOSINE/GUANINE deaminase: “Crystal structure of an amidohydrolase from an environmental sample of sargasso sea”. X-ray diffraction, 1 ligand (ZN), 4 pockets (best druggability 0.52). MolNFT v1 #47839 on GenesisL1: 3D…

PDB: 2PAJ
Type: protein
Length: 421 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative CYTOSINE/GUANINE deaminase
Ligands: ZN
Pockets: 4 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative CYTOSINE/GUANINE deaminase	protein	421	37% helix, 19% strand	—

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	262	0.52	0.75	36	empty
2	106	0.37	0.75	22	empty
3	56	0.35	0.78	20	empty
4	73	0.33	0.74	16	empty

Compared structures

2PAJ · Crystal structure of an amidohydrolase from an environmental sample of Sargasso sea · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2PAJ · PDBe 2PAJ

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