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Crystal structure of an amidohydrolase from an environmental sample of sargasso sea
Analyse Crystal structure of an amidohydrolase from an environmental sample of sargasso… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PAJ
- Type
- protein
- Length
- 421 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative CYTOSINE/GUANINE deaminase
- Ligands
- ZN
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative CYTOSINE/GUANINE deaminase | protein | 421 | 37% helix, 19% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 262 | 0.52 | 0.75 | 36 | empty |
| 2 | 106 | 0.37 | 0.75 | 22 | empty |
| 3 | 56 | 0.35 | 0.78 | 20 | empty |
| 4 | 73 | 0.33 | 0.74 | 16 | empty |
Compared structures
- 2PAJ · Crystal structure of an amidohydrolase from an environmental sample of Sargasso sea · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2PAJ · PDBe 2PAJ
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