MolNFT v1 · #47644 · protein
Crystal structure of a CORC_HLYC domain from haemophilus ducreyi
2P4P · Hypothetical protein HD1797: “Crystal structure of a CORC_HLYC domain from haemophilus ducreyi”. X-ray diffraction, 2 ligands (CA, MG), 1 pocket (best druggability 0.49). MolNFT v1 #47644 on GenesisL1: 3D structure, binding sites…
- PDB
- 2P4P
- Type
- protein
- Length
- 161 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein HD1797
- UniProt
- Q7VKS4
- Ligands
- CA, MG
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 20% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein HD1797 | protein | 84 | 19% helix, 35% strand | Q7VKS4 |
| B | Hypothetical protein HD1797 | protein | 77 | 21% helix, 38% strand | Q7VKS4 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- MG · Magnesium ion · metal · chains A, B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.49 | 0.82 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 674 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 23 modified (methylation, engineered).
Compared structures
- 2P4P · Crystal structure of a CorC_HlyC domain from Haemophilus ducreyi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7VKS4
- Elsewhere: RCSB PDB 2P4P · PDBe 2P4P · UniProt Q7VKS4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.