MolNFT v1 · #47531 · protein

Crystal structure of dengue methyltransferase in complex with GTP and S-adenosyl-L-homocysteine

2P1D · Type II methyltransferase: “Crystal structure of dengue methyltransferase in complex with GTP and S-adenosyl-L-homocysteine”. X-ray diffraction, 3 ligands (SAH, 5GP, SO4), 1 pocket (best druggability 0.64). MolNFT v1 #47531 on…

PDB: 2P1D
Type: protein
Length: 259 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type II methyltransferase
EC: 2.7.7.48
UniProt: Q9WLZ8
Ligands: SAH, 5GP, SO4
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Type II methyltransferase (EC 2.7.7.48)	protein	259	34% helix, 15% strand	Q9WLZ8

Ligands and binding sites

SAH · S-adenosyl-L-homocysteine · ligand · chains A
5GP · Guanosine-5'-monophosphate · ligand · chains A
SO4 · Sulfate ion · ion · 10 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	476	0.64	0.77	52	SO4, SAH, 5GP

Compared structures

2P1D · Crystal structure of dengue methyltransferase in complex with GTP and… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9WLZ8
Elsewhere: RCSB PDB 2P1D · PDBe 2P1D · UniProt Q9WLZ8

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