Study on radiation damage on a cryocooled crystal. part 1: structure prior to irradiation

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).

Ligands and binding sites

• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 14 copies · chains M
• BMA · beta-D-mannopyranose · sugar · 2 copies
• XYP · beta-D-xylopyranose · sugar · 2 copies
• FUC · alpha-L-fucopyranose · sugar · 2 copies · chains M
• MAN · alpha-D-mannopyranose · sugar · 2 copies · chains M
• ZN · Zinc ion · metal · chains M
• SO4 · Sulfate ion · ion · 8 copies · chains M
• GOL · Glycerol · additive · 5 copies · chains M

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Modifications

Observed in the structure: 10 glycan, 2 disulfide (N-glycosylation, disulfide).

Compared structures

• 1DWA · Study on radiation damage on a cryocooled crystal. part 1: structure prior to irradiation · the same entry in another collection · chain M against M, TM-score 1.00
• P29736 · AlphaFold monomer V2.0 prediction for myrosinase MA1 (P29736) · a predicted model of the same protein · chain M against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P29736
• Elsewhere: RCSB PDB 1DWA · PDBe 1DWA · UniProt P29736