MolNFT v1 · #46978 · DNA
X-ray structure of a DNA repair substrate containing an alkyl interstrand crosslink at 1.65 resolution
2OKS · 5'-D(*CP*CP*AP*AP*(C34)P*GP*TP*TP*GP*G)-3': “X-ray structure of a DNA repair substrate containing an alkyl interstrand crosslink at 1.65 resolution”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #46978 on GenesisL1: 3D structure…
- PDB
- 2OKS
- Type
- DNA
- Length
- 10 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*CP*AP*AP*(C34)P*GP*TP*TP*GP*G)-3'
- Ligands
- CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*CP*AP*AP*(C34)P*GP*TP*TP*GP*G)-3' | dna | 10 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 2OKS · X-ray Structure of a DNA Repair Substrate Containing an Alkyl Interstrand Crosslink at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2OKS · PDBe 2OKS
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