MolNFT v1 · #46929 · protein
Structure of igf-1R kinase domain complexed with a benzimidazole inhibitor
2OJ9 · Insulin-like growth factor 1 receptor precursor (ec…: “Structure of igf-1R kinase domain complexed with a benzimidazole inhibitor”. X-ray diffraction, 1 ligand (BMI), 3 pockets (best druggability 0.72). MolNFT v1 #46929 on…
- PDB
- 2OJ9
- Type
- protein
- Length
- 295 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Insulin-like growth factor 1 receptor precursor (ec 2.7.10.1) (insulin-like growth factor…
- EC
- 2.7.1.112
- UniProt
- P08069
- Ligands
- BMI
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Insulin-like growth factor 1 receptor precursor (ec 2.7.10.1) (insulin-like growth factor I receptor) (igf- I receptor) (CD221 antigen) (EC 2.7.1.112) | protein | 295 | 38% helix, 19% strand | P08069 |
Ligands and binding sites
- BMI · 3-[5-(1H-imidazol-1-yl)-7-methyl-1H-benzimidazol-2-yl]-4-[(pyridin-2-ylmethyl)amino]pyridin-2(1H)-one · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 367 | 0.72 | 0.83 | 46 | BMI |
| 2 | 71 | 0.36 | 0.76 | 18 | empty |
| 3 | 115 | 0.34 | 0.72 | 21 | empty |
Compared structures
- 2OJ9 · Structure of IGF-1R kinase domain complexed with a benzimidazole inhibitor · the same entry in another collection · chain A against A, TM-score 1.00
- P08069 · AlphaFold monomer V2.0 prediction for insulin-like growth factor 1 receptor (P08069) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08069
- Elsewhere: RCSB PDB 2OJ9 · PDBe 2OJ9 · UniProt P08069
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