MolNFT v1 · #4691 · protein
Crystal structure of the vhs and fyve tandem domains of hrs, a protein involved in membrane trafficking and signal transduction
1DVP · Hepatocyte growth factor-regulated tyrosine kinase substrate: “Crystal structure of the vhs and fyve tandem domains of hrs, a protein involved in membrane trafficking and…”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best…
- PDB
- 1DVP
- Type
- protein
- Length
- 217 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hepatocyte growth factor-regulated tyrosine kinase substrate
- UniProt
- Q960X8
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hepatocyte growth factor-regulated tyrosine kinase substrate | protein | 217 | 52% helix, 8% strand | Q960X8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 342 | 0.59 | 0.76 | 33 | empty |
Compared structures
- 1DVP · Crystal structure of the vhs and fyve tandem domains of hrs, a protein involved in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q960X8 · AlphaFold monomer V2.0 prediction for hepatocyte growth factor- regulated tyrosine kinase… · a predicted model of the same protein · chain A against A, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q960X8
- Elsewhere: RCSB PDB 1DVP · PDBe 1DVP · UniProt Q960X8
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