MolNFT v1 · #46826 · protein

Crystal structure of asparagine oxygenase (asno)

2OG5 · Putative oxygenase: “Crystal structure of asparagine oxygenase (asno)”. X-ray diffraction, 1 ligand (NA), 3 pockets (best druggability 0.67). MolNFT v1 #46826 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2OG5
Type: protein
Length: 315 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative oxygenase
UniProt: Q9Z4Z5
Ligands: NA
Pockets: 3 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative oxygenase	protein	315	32% helix, 22% strand	Q9Z4Z5

Ligands and binding sites

NA · Sodium ion · metal · chains A
ACY · Acetic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	321	0.67	0.82	39	empty
2	52	0.35	0.79	18	empty
3	60	0.30	0.75	16	empty

Compared structures

2OG5 · Crystal structure of asparagine oxygenase (AsnO) · the same entry in another collection · chain A against A, TM-score 1.00
Q9Z4Z5 · AlphaFold monomer V2.0 prediction for L-asparagine oxygenase (Q9Z4Z5) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Z4Z5
Elsewhere: RCSB PDB 2OG5 · PDBe 2OG5 · UniProt Q9Z4Z5

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