MolNFT v1 · #46740 · protein

Crystal structure of S. aureus ylan, an essential leucine rich protein involved in the control of cell shape

2ODM · UPF0358 protein MW0995: “Crystal structure of S. aureus ylan, an essential leucine rich protein involved in the control of cell shape”. X-ray diffraction, 1 pocket (best druggability 0.35). MolNFT v1 #46740 on GenesisL1: 3D…

PDB: 2ODM
Type: protein
Length: 162 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0358 protein MW0995
UniProt: Q7A161
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 2 distinct chains · 83% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UPF0358 protein MW0995	protein	79	78% helix, 0% strand	Q7A161
B	UPF0358 protein MW0995	protein	83	87% helix, 0% strand	Q7A161

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.35	0.77	13	empty

Interfaces

1 interface between chains.

A–B · 829 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

2ODM · Crystal structure of S. aureus YlaN, an essential leucine rich protein involved in the… · the same entry in another collection · chain A against A, TM-score 1.00
Q7A161 · AlphaFold monomer V2.0 prediction for UPF0358 protein MW0995 (Q7A161) · a predicted model of the same protein · chain A against A, TM-score 0.82

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7A161
Elsewhere: RCSB PDB 2ODM · PDBe 2ODM · UniProt Q7A161

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