Research workbench

Crystal structure of S. aureus ylan, an essential leucine rich protein involved in the control of cell shape

Analyse Crystal structure of S. aureus ylan, an essential leucine rich protein involved… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2ODM
Type: protein
Length: 162 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0358 protein MW0995
UniProt: Q7A161
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 2 distinct chains · 83% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UPF0358 protein MW0995	protein	79	78% helix, 0% strand	Q7A161
B	UPF0358 protein MW0995	protein	83	87% helix, 0% strand	Q7A161

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.35	0.77	13	empty

Interfaces

1 interface between chains.

A–B · 829 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

2ODM · Crystal structure of S. aureus YlaN, an essential leucine rich protein involved in the… · the same entry in another collection · chain A against A, TM-score 1.00
Q7A161 · AlphaFold monomer V2.0 prediction for UPF0358 protein MW0995 (Q7A161) · a predicted model of the same protein · chain A against A, TM-score 0.82

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7A161
Elsewhere: RCSB PDB 2ODM · PDBe 2ODM · UniProt Q7A161

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.