MolNFT v1 · #46531 · protein

T4 lysozyme with C-terminal extension

2O79: “T4 lysozyme with C-terminal extension”. X-ray diffraction, 2 ligands (CL, PO4), 1 pocket (best druggability 0.52). MolNFT v1 #46531 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2O79
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme
EC: 3.2.1.17
UniProt: P00720
Ligands: CL, PO4
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme (EC 3.2.1.17)	protein	162	65% helix, 8% strand	P00720

Ligands and binding sites

CL · Chloride ion · ion · 3 copies · chains A
PO4 · Phosphate ion · ion · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	220	0.52	0.76	29	CL, GOL

Compared structures

2O79 · T4 lysozyme with C-terminal extension · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00720
Elsewhere: RCSB PDB 2O79 · PDBe 2O79 · UniProt P00720

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