MolNFT v1 · #46083 · protein

Crystal structure of sek-HVB5.1

2NTS · TRBC1 protein: “Crystal structure of sek-HVB5.1”. X-ray diffraction, 4 pockets (best druggability 0.50). MolNFT v1 #46083 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2NTS
Type: protein
Length: 457 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRBC1 protein; Staphylococcal enterotoxin K
UniProt: Q8N2T6, Q5HHK0
Pockets: 4 · best druggability 0.50

Structure

x-ray diffraction · 2 distinct chains · 11% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
P	TRBC1 protein	protein	240	3% helix, 50% strand	Q8N2T6
A	Staphylococcal enterotoxin K	protein	217	19% helix, 37% strand	Q5HHK0

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	143	0.50	0.79	27	empty
2	109	0.40	0.76	24	empty
3	122	0.40	0.75	19	empty
4	72	0.30	0.73	18	empty

Interfaces

1 interface between chains.

P–A · 818 Å² buried · 20 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

2NTS · Crystal Structure of SEK-hVb5.1 · the same entry in another collection · chain P against P, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8N2T6
Every structure of UniProt Q5HHK0
Elsewhere: RCSB PDB 2NTS · PDBe 2NTS · UniProt Q8N2T6 · UniProt Q5HHK0

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