Research workbench
Crystal structure of sek-HVB5.1
Analyse Crystal structure of sek-HVB5.1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2NTS
- Type
- protein
- Length
- 457 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRBC1 protein; Staphylococcal enterotoxin K
- UniProt
- Q8N2T6, Q5HHK0
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P | TRBC1 protein | protein | 240 | 3% helix, 50% strand | Q8N2T6 |
| A | Staphylococcal enterotoxin K | protein | 217 | 19% helix, 37% strand | Q5HHK0 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.50 | 0.79 | 27 | empty |
| 2 | 109 | 0.40 | 0.76 | 24 | empty |
| 3 | 122 | 0.40 | 0.75 | 19 | empty |
| 4 | 72 | 0.30 | 0.73 | 18 | empty |
Interfaces
1 interface between chains.
- P–A · 818 Ų buried · 20 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2NTS · Crystal Structure of SEK-hVb5.1 · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N2T6
- Every structure of UniProt Q5HHK0
- Elsewhere: RCSB PDB 2NTS · PDBe 2NTS · UniProt Q8N2T6 · UniProt Q5HHK0
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