MolNFT v1 · #46072 · protein
Structure of spin-labeled T4 lysozyme mutant L118R1
2NTH: “Structure of spin-labeled T4 lysozyme mutant L118R1”. X-ray diffraction, 1 ligand (MTN), 2 pockets (best druggability 0.58). MolNFT v1 #46072 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2NTH
- Type
- protein
- Length
- 164 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme
- EC
- 3.2.1.17
- UniProt
- P00720
- Ligands
- MTN
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme (EC 3.2.1.17) | protein | 164 | 61% helix, 9% strand | P00720 |
Ligands and binding sites
- MTN · S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 120 | 0.58 | 0.84 | 20 | MTN |
| 2 | 262 | 0.56 | 0.77 | 32 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 2NTH · Structure of Spin-labeled T4 Lysozyme Mutant L118R1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00720
- Elsewhere: RCSB PDB 2NTH · PDBe 2NTH · UniProt P00720
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