MolNFT v1 · #45516 · protein
The 3D solution structure of discoidal high-density lipoprotein particles
2N5E · Apolipoprotein a-I: “The 3D solution structure of discoidal high-density lipoprotein particles”. Solution nmr, 3 pockets (best druggability 0.37). MolNFT v1 #45516 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2N5E
- Type
- protein
- Length
- 334 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apolipoprotein a-I
- UniProt
- P02647
- Pockets
- 3 · best druggability 0.37
Structure
solution nmr · 1 distinct chain · 95% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Apolipoprotein a-I | protein | 167 | 95% helix, 0% strand | P02647 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.37 | 0.72 | 16 | empty |
| 2 | 96 | 0.33 | 0.73 | 14 | empty |
| 3 | 75 | 0.30 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1991 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 2N5E · The 3D solution structure of discoidal high-density lipoprotein particles · the same entry in another collection · chain A against A, TM-score 1.00
- P02647 · AlphaFold monomer V2.0 prediction for apolipoprotein a-I (P02647) · a predicted model of the same protein · chain A against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02647
- Elsewhere: RCSB PDB 2N5E · PDBe 2N5E · UniProt P02647
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