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MolNFT v1 · #45347 · protein

MDMX-298

2N06 · Protein MDM4: “MDMX-298”. Solution nmr, 1 ligand (44Z), 1 pocket (best druggability 0.60). MolNFT v1 #45347 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
2N06
Type
protein
Length
89 residues
Chains
1
Method
solution nmr
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Protein MDM4
UniProt
O15151
Ligands
44Z
Pockets
1 · best druggability 0.60

Structure

solution nmr · 1 distinct chain · 49% helix, 12% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProtein MDM4protein8949% helix, 12% strandO15151

Ligands and binding sites

  • 44Z · 4-[[(4S,5R)-5-(4-chlorophenyl)-4-(3-methoxyphenyl)-2-(4-methoxy-2-propan-2-yloxy-phenyl)-4,5-dihydroimidazol-1-yl]carbonyl]piperazin-2-one · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11970.600.812544Z

Compared structures

  • 2N06 · Mdmx-298 · the same entry in another collection · chain A against A, TM-score 1.00
  • O15151 · AlphaFold monomer V2.0 prediction for protein MDM4 (O15151) · a predicted model of the same protein · chain A against A, TM-score 0.77

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