MolNFT v1 · #4504 · protein

Unlocked metal-free concanavalin a

1DQ2 · Concanavalin-br: “Unlocked metal-free concanavalin a”. X-ray diffraction. MolNFT v1 #4504 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1DQ2
Type: protein
Length: 444 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Concanavalin-br
UniProt: P55915

Structure

x-ray diffraction · 2 distinct chains · 4% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Concanavalin-br	protein	224	4% helix, 49% strand	P55915
B	Concanavalin-br	protein	220	4% helix, 49% strand	P55915

Ligands and binding sites

ACY · Acetic acid · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 1084 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

1DQ2 · Unlocked metal-free concanavalin A · the same entry in another collection · chain A against A, TM-score 1.00
P55915 · AlphaFold monomer V2.0 prediction for concanavalin-br (P55915) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P55915
Elsewhere: RCSB PDB 1DQ2 · PDBe 1DQ2 · UniProt P55915

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