MolNFT v1 · #45020 · protein
WW3 domain of NEDD4L in complex with its hect domain py motif
2MPT · E3 ubiquitin-protein ligase NEDD4-like: “WW3 domain of NEDD4L in complex with its hect domain py motif”. Solution nmr, 1 ligand (NH2). MolNFT v1 #45020 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2MPT
- Type
- protein
- Length
- 45 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E3 ubiquitin-protein ligase NEDD4-like
- EC
- 6.3.2.-
- UniProt
- Q96PU5
- Ligands
- NH2
Structure
solution nmr · 2 distinct chains · 0% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase NEDD4-like (EC 6.3.2.-) | protein | 32 | 0% helix, 41% strand | Q96PU5 |
| B | E3 ubiquitin-protein ligase NEDD4-like (EC 6.3.2.-) | protein | 13 | 0% helix, 0% strand | Q96PU5 |
Ligands and binding sites
- NH2 · Amino group · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 548 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 2MPT · WW3 domain of Nedd4L in complex with its HECT domain PY motif · the same entry in another collection · chain A against A, TM-score 1.00
- Q96PU5 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase NEDD4-like (Q96PU5) · a predicted model of the same protein · chain A against A, TM-score 0.70
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96PU5
- Elsewhere: RCSB PDB 2MPT · PDBe 2MPT · UniProt Q96PU5
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