MolNFT v1 · #44880 · protein

Solution structure of ALGE6R3 subunit from the azotobacter vinelandii mannuronan C5-epimerase

2ML3 · POLY(BETA-D-mannuronate) C5 epimerase 6: “Solution structure of ALGE6R3 subunit from the azotobacter vinelandii mannuronan C5-epimerase”. Solution nmr, 1 ligand (CA), 1 pocket (best druggability 0.27). MolNFT v1 #44880 on GenesisL1…

PDB: 2ML3
Type: protein
Length: 181 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: POLY(BETA-D-mannuronate) C5 epimerase 6
EC: 5.1.3.-
UniProt: Q9ZFH0
Ligands: CA
Pockets: 1 · best druggability 0.27

Structure

solution nmr · 1 distinct chain · 2% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	POLY(BETA-D-mannuronate) C5 epimerase 6 (EC 5.1.3.-)	protein	181	2% helix, 25% strand	Q9ZFH0

Ligands and binding sites

CA · Calcium ion · metal · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.27	0.73	15	empty

Compared structures

2ML3 · Solution Structure of AlgE6R3 subunit from the Azotobacter vinelandii Mannuronan… · the same entry in another collection · chain A against A, TM-score 1.00
Q9ZFH0 · AlphaFold monomer V2.0 prediction for mannuronan C5-epimerase ALGE6 (Q9ZFH0) · a predicted model of the same protein · chain A against A, TM-score 0.72

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ZFH0
Elsewhere: RCSB PDB 2ML3 · PDBe 2ML3 · UniProt Q9ZFH0

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