MolNFT v1 · #4444 · protein

Solution structure of oxidized microsomal rabbit cytochrome B5. factors determining the heterogeneous binding of the heme.

1DO9: “Solution structure of oxidized microsomal rabbit cytochrome B5. factors determining the heterogeneous binding…”. Solution nmr, 1 ligand (HEM), 1 pocket (best druggability 0.60). MolNFT v1 #4444 on GenesisL1: 3D structure, binding…

PDB: 1DO9
Type: protein
Length: 94 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome B5
UniProt: P00169
Ligands: HEM
Pockets: 1 · best druggability 0.60

Structure

solution nmr · 1 distinct chain · 34% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome B5	protein	94	34% helix, 15% strand	P00169

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	112	0.60	0.85	20	HEM

Compared structures

1DO9 · Solution structure of oxidized microsomal rabbit cytochrome B5. factors determining the… · the same entry in another collection · chain A against A, TM-score 1.00
P00169 · AlphaFold monomer V2.0 prediction for cytochrome B5 (P00169) · a predicted model of the same protein · chain A against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00169
Elsewhere: RCSB PDB 1DO9 · PDBe 1DO9 · UniProt P00169

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