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Solution structure of oxidized microsomal rabbit cytochrome B5. factors determining the heterogeneous binding of the heme.

Analyse Solution structure of oxidized microsomal rabbit cytochrome B5. factors… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1DO9
Type: protein
Length: 94 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome B5
UniProt: P00169
Ligands: HEM
Pockets: 1 · best druggability 0.60

Structure

solution nmr · 1 distinct chain · 34% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome B5	protein	94	34% helix, 15% strand	P00169

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	112	0.60	0.85	20	HEM

Compared structures

1DO9 · Solution structure of oxidized microsomal rabbit cytochrome B5. factors determining the… · the same entry in another collection · chain A against A, TM-score 1.00
P00169 · AlphaFold monomer V2.0 prediction for cytochrome B5 (P00169) · a predicted model of the same protein · chain A against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00169
Elsewhere: RCSB PDB 1DO9 · PDBe 1DO9 · UniProt P00169

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