MolNFT v1 · #4427 · DNA
Base only binding of spermine in the deep groove of the a- DNA octamer D(GTGTACAC)
1DNS · DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3'): “Base only binding of spermine in the deep groove of the a- DNA octamer D(GTGTACAC)”. X-ray diffraction, 1 ligand (SPM). MolNFT v1 #4427 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1DNS
- Type
- DNA
- Length
- 8 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3')
- Ligands
- SPM
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3') | dna | 8 | — | — |
Ligands and binding sites
- SPM · Spermine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1DNS · Base only binding of spermine in the deep groove of the a-DNA octamer D(GTGTACAC) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1DNS · PDBe 1DNS
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