MolNFT v1 · #44047 · protein
GP78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin
2LVP: “GP78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin”. Solution nmr. MolNFT v1 #44047 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2LVP
- Type
- protein
- Length
- 204 residues
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin; E3 ubiquitin-protein ligase amfr
- EC
- 6.3.2.-
- UniProt
- P0CG48, Q9UKV5
Structure
solution nmr · 2 distinct chains · 37% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ubiquitin | protein | 76 | 22% helix, 33% strand | P0CG48 |
| C | E3 ubiquitin-protein ligase amfr (EC 6.3.2.-) | protein | 52 | 58% helix, 0% strand | Q9UKV5 |
Interfaces
3 interfaces between chains.
- A–C · 710 Ų buried · 14 hydrogen bonds · protein-protein
- B–C · 410 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 72 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2LVP · gp78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UKV5 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase amfr (Q9UKV5) · a predicted model of the same protein · chain C against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CG48
- Every structure of UniProt Q9UKV5
- Elsewhere: RCSB PDB 2LVP · PDBe 2LVP · UniProt P0CG48 · UniProt Q9UKV5
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