MolNFT v1 · #43237 · protein
Solution NMR structure of proteorhodopsin.
2L6X · Green-light absorbing proteorhodopsin: “Solution NMR structure of proteorhodopsin.”. Solution nmr, 1 ligand (RET), 5 pockets (best druggability 0.81). MolNFT v1 #43237 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2L6X
- Type
- protein
- Length
- 235 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green-light absorbing proteorhodopsin
- UniProt
- Q9F7P4
- Ligands
- RET
- Pockets
- 5 · best druggability 0.81
Structure
solution nmr · 1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green-light absorbing proteorhodopsin | protein | 235 | 76% helix, 0% strand | Q9F7P4 |
Ligands and binding sites
- RET · Retinal · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 674 | 0.81 | 0.85 | 78 | RET |
| 2 | 119 | 0.56 | 0.84 | 24 | empty |
| 3 | 151 | 0.56 | 0.81 | 25 | empty |
| 4 | 54 | 0.38 | 0.80 | 13 | empty |
| 5 | 54 | 0.33 | 0.77 | 11 | empty |
Modifications
Observed in the structure: 1 cofactor (retinal Schiff base).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9F7P4
- Elsewhere: RCSB PDB 2L6X · PDBe 2L6X · UniProt Q9F7P4
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