MolNFT v1 · #43149 · protein
Cytochrome C domain of PP3183 protein from pseudomonas putida
2L4D · SCO1/SENC family PROTEIN/CYTOCHROME C: “Cytochrome C domain of PP3183 protein from pseudomonas putida”. Solution nmr, 1 ligand (HEC), 1 pocket (best druggability 0.78). MolNFT v1 #43149 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2L4D
- Type
- protein
- Length
- 106 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SCO1/SENC family PROTEIN/CYTOCHROME C
- UniProt
- Q88I19
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.78
Structure
solution nmr · 1 distinct chain · 47% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SCO1/SENC family PROTEIN/CYTOCHROME C | protein | 106 | 47% helix, 2% strand | Q88I19 |
Ligands and binding sites
- HEC · Heme C · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 351 | 0.78 | 0.88 | 38 | HEC |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 2L4D · cytochrome c domain of pp3183 protein from Pseudomonas putida · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88I19
- Elsewhere: RCSB PDB 2L4D · PDBe 2L4D · UniProt Q88I19
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