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Cytochrome C domain of PP3183 protein from pseudomonas putida

Analyse Cytochrome C domain of PP3183 protein from pseudomonas putida in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2L4D
Type: protein
Length: 106 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SCO1/SENC family PROTEIN/CYTOCHROME C
UniProt: Q88I19
Ligands: HEC
Pockets: 1 · best druggability 0.78

Structure

solution nmr · 1 distinct chain · 47% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SCO1/SENC family PROTEIN/CYTOCHROME C	protein	106	47% helix, 2% strand	Q88I19

Ligands and binding sites

HEC · Heme C · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	351	0.78	0.88	38	HEC

Modifications

Observed in the structure: 2 cofactor (heme c attachment).

Compared structures

2L4D · cytochrome c domain of pp3183 protein from Pseudomonas putida · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88I19
Elsewhere: RCSB PDB 2L4D · PDBe 2L4D · UniProt Q88I19

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