MolNFT v1 · #43141 · protein + DNA

C-terminal zinc knuckle of the HIVNCP7 with DNA

2L45 · C-terminal zinc knucle of the HIV-NCP7: “C-terminal zinc knuckle of the HIVNCP7 with DNA”. Solution nmr, 1 ligand (ZN). MolNFT v1 #43141 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2L45
Type: protein + DNA
Length: 25 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C-terminal zinc knucle of the HIV-NCP7; DNA (5'-D(P*TP*AP*CP*GP*CP*C)-3')
UniProt: Q9YP46
Ligands: ZN

Structure

solution nmr · 2 distinct chains · 21% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	C-terminal zinc knucle of the HIV-NCP7	protein	19	21% helix, 0% strand	Q9YP46
B	DNA (5'-D(PTPAPCPGPCPC)-3')	dna	6	—	—

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 402 Å² buried · 5 hydrogen bonds · protein-nucleic

Compared structures

2L45 · C-terminal zinc knuckle of the HIVNCp7 with DNA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9YP46
Elsewhere: RCSB PDB 2L45 · PDBe 2L45 · UniProt Q9YP46

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.