Research workbench
C-terminal zinc knuckle of the HIVNCP7 with DNA
Analyse C-terminal zinc knuckle of the HIVNCP7 with DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2L45
- Type
- protein + DNA
- Length
- 25 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C-terminal zinc knucle of the HIV-NCP7; DNA (5'-D(P*TP*AP*CP*GP*CP*C)-3')
- UniProt
- Q9YP46
- Ligands
- ZN
Structure
solution nmr · 2 distinct chains · 21% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C-terminal zinc knucle of the HIV-NCP7 | protein | 19 | 21% helix, 0% strand | Q9YP46 |
| B | DNA (5'-D(P*TP*AP*CP*GP*CP*C)-3') | dna | 6 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 402 Ų buried · 5 hydrogen bonds · protein-nucleic
Compared structures
- 2L45 · C-terminal zinc knuckle of the HIVNCp7 with DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9YP46
- Elsewhere: RCSB PDB 2L45 · PDBe 2L45 · UniProt Q9YP46
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