MolNFT v1 · #42767 · protein
Solution NMR structure of sensory rhodopsin II
2KSY: “Solution NMR structure of sensory rhodopsin II”. Solution nmr, 1 ligand (RET), 3 pockets (best druggability 0.80). MolNFT v1 #42767 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2KSY
- Type
- protein
- Length
- 247 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sensory rhodopsin II
- UniProt
- Q3IMZ8
- Ligands
- RET
- Pockets
- 3 · best druggability 0.80
Structure
solution nmr · 1 distinct chain · 68% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sensory rhodopsin II | protein | 247 | 68% helix, 3% strand | Q3IMZ8 |
Ligands and binding sites
- RET · Retinal · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.80 | 0.96 | 27 | RET |
| 2 | 115 | 0.55 | 0.83 | 22 | empty |
| 3 | 72 | 0.36 | 0.77 | 14 | empty |
Modifications
Observed in the structure: 1 cofactor (retinal Schiff base).
Compared structures
- 2KSY · Solution nmr structure of sensory rhodopsin II · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3IMZ8
- Elsewhere: RCSB PDB 2KSY · PDBe 2KSY · UniProt Q3IMZ8
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