MolNFT v1 · #42685 · protein
First pbz domain of human aplf protein in complex with ribofuranosyladenosine
2KQD · Aprataxin and pnk-like factor: “First pbz domain of human aplf protein in complex with ribofuranosyladenosine”. Solution nmr, 3 ligands (ADN, RIB, ZN). MolNFT v1 #42685 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2KQD
- Type
- protein
- Length
- 55 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aprataxin and pnk-like factor
- EC
- 4.2.99.18
- UniProt
- Q8IW19
- Ligands
- ADN, RIB, ZN
Structure
solution nmr · 1 distinct chain · 13% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aprataxin and pnk-like factor (EC 4.2.99.18) | protein | 55 | 13% helix, 7% strand | Q8IW19 |
Ligands and binding sites
- ADN · Adenosine · ligand · chains A
- RIB · alpha-D-ribofuranose · ligand · chains A
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 2KQD · First PBZ domain of human APLF protein in complex with ribofuranosyladenosine · the same entry in another collection · chain A against A, TM-score 1.00
- Q8IW19 · AlphaFold monomer V2.0 prediction for aprataxin and pnk-like factor (Q8IW19) · a predicted model of the same protein · chain A against A, TM-score 0.54
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IW19
- Elsewhere: RCSB PDB 2KQD · PDBe 2KQD · UniProt Q8IW19
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