MolNFT v1 · #42487 · protein

NMR structure of ni substitued desulfovibrio vulgaris rubredoxin

2KKD: “NMR structure of ni substitued desulfovibrio vulgaris rubredoxin”. Solution nmr, 1 ligand (NI). MolNFT v1 #42487 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2KKD
Type: protein
Length: 52 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rubredoxin
UniProt: P00269
Ligands: NI

Structure

solution nmr · 1 distinct chain · 12% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rubredoxin	protein	52	12% helix, 19% strand	P00269

Ligands and binding sites

NI · Nickel (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

2KKD · NMR Structure of Ni Substitued Desulfovibrio vulgaris Rubredoxin · the same entry in another collection · chain A against A, TM-score 1.00
P00269 · AlphaFold monomer V2.0 prediction for rubredoxin (P00269) · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00269
Elsewhere: RCSB PDB 2KKD · PDBe 2KKD · UniProt P00269

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