MolNFT v1 · #424 · protein
Asv integrase core domain with HIV-1 integrase inhibitor Y3
1A5X: “Asv integrase core domain with HIV-1 integrase inhibitor Y3”. X-ray diffraction, 1 ligand (Y3). MolNFT v1 #424 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1A5X
- Type
- protein
- Length
- 146 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Integrase
- EC
- 2.7.7.49
- UniProt
- P03354
- Ligands
- Y3
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Integrase (EC 2.7.7.49) | protein | 146 | 47% helix, 18% strand | P03354 |
Ligands and binding sites
- Y3 · 4-acetylamino-5-hydroxynaphthalene-2,7-disulfonic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1A5X · Asv integrase core domain with HIV-1 integrase inhibitor Y3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03354
- Elsewhere: RCSB PDB 1A5X · PDBe 1A5X · UniProt P03354
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