MolNFT v1 · #42325 · protein
Structure of the C-terminal domain of EHD1 in complex with fnyestdpftak
2KFG · Eh domain-containing protein 1: “Structure of the C-terminal domain of EHD1 in complex with fnyestdpftak”. Solution nmr, 1 ligand (CA). MolNFT v1 #42325 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2KFG
- Type
- protein
- Length
- 117 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Eh domain-containing protein 1; RAB11-FIP2 dpf peptide fnyestdpftak
- UniProt
- Q9H4M9
- Ligands
- CA
Structure
solution nmr · 2 distinct chains · 44% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Eh domain-containing protein 1 | protein | 105 | 49% helix, 6% strand | Q9H4M9 |
| B | RAB11-FIP2 dpf peptide fnyestdpftak | protein | 12 | 0% helix, 0% strand | — |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 306 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2KFG · Structure of the C-terminal domain of EHD1 in complex with FNYESTDPFTAK · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H4M9 · AlphaFold monomer V2.0 prediction for eh domain-containing protein 1 (Q9H4M9) · a predicted model of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H4M9
- Elsewhere: RCSB PDB 2KFG · PDBe 2KFG · UniProt Q9H4M9
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