MolNFT v1 · #4139 · protein + DNA
Human APE1 endonuclease with bound abasic DNA and MN2+ ion
1DE9: “Human APE1 endonuclease with bound abasic DNA and MN2+ ion”. X-ray diffraction. MolNFT v1 #4139 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1DE9
- Type
- protein + DNA
- Length
- 588 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P27695
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X, U | — | dna | 4 | — | — |
| Y, V | — | dna | 5 | — | — |
| Z, W | — | dna | 9 | — | — |
| A, B | — | protein | 276 | — | P27695 |
Compared structures
- 1DE9 · Human APE1 endonuclease with bound abasic DNA and MN2+ ion · the same entry in another collection · chain B against B, TM-score 1.00
- P27695 · AlphaFold monomer V2.0 prediction for DNA-(apurinic or apyrimidinic site) endonuclease… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27695
- Elsewhere: RCSB PDB 1DE9 · PDBe 1DE9 · UniProt P27695
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