MolNFT v1 · #41145 · protein
Family 5 xyloglucanase from paenibacillus pabuli in complex with ligand
2JEQ: “Family 5 xyloglucanase from paenibacillus pabuli in complex with ligand”. X-ray diffraction, 3 ligands (BGC, XYS, GAL), 1 pocket (best druggability 0.56). MolNFT v1 #41145 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2JEQ
- Type
- protein
- Length
- 359 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xyloglucanase
- EC
- 3.2.1.151
- Ligands
- BGC, XYS, GAL
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xyloglucanase (EC 3.2.1.151) | protein | 359 | 35% helix, 14% strand | — |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 4 copies · chains A
- XYS · alpha-D-xylopyranose · sugar · 2 copies · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 361 | 0.56 | 0.75 | 44 | BGC, XYS |
Compared structures
- 2JEQ · Family 5 xyloglucanase from Paenibacillus pabuli in complex with ligand · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2JEQ · PDBe 2JEQ
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