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MolNFT v1 · #40319 · protein

The structure of des-phe B1 bovine insulin

2INS · Des-phe B1 insulin (chain a): “The structure of des-phe B1 bovine insulin”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #40319 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
2INS
Type
protein
Length
100 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Des-phe B1 insulin (chain a); Des-phe B1 insulin (chain B)
UniProt
P01317
Ligands
ZN

Structure

x-ray diffraction · 2 distinct chains · 56% helix, 10% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, CDes-phe B1 insulin (chain a)protein2167% helix, 10% strandP01317
B, DDes-phe B1 insulin (chain B)protein2948% helix, 10% strandP01317

Ligands and binding sites

  • ZN · Zinc ion · metal · 2 copies · chains B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

5 interfaces between chains.

  • C–D · 852 Ų buried · 10 hydrogen bonds · protein-protein
  • A–B · 812 Ų buried · 11 hydrogen bonds · protein-protein
  • B–D · 646 Ų buried · 8 hydrogen bonds · protein-protein
  • B–C · 67 Ų buried · 1 hydrogen bond · protein-protein
  • A–D · 37 Ų buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

  • 2INS · The structure of des-phe B1 bovine insulin · the same entry in another collection · chain A against A, TM-score 1.00
  • P01317 · AlphaFold monomer V2.0 prediction for insulin (P01317) · a predicted model of the same protein · chain B against A, TM-score 0.40

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