MolNFT v1 · #40058 · protein
Crystal structure of YCKB_BACSU from bacillus subtilis. northeast structural genomics consortium target SR574.
2IEE · Probable ABC transporter extracellular-binding protein yckb: “Crystal structure of YCKB_BACSU from bacillus subtilis. northeast structural genomics consortium target SR574.”. X-ray diffraction, 2 pockets (best druggability 0.59).…
- PDB
- 2IEE
- Type
- protein
- Length
- 495 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable ABC transporter extracellular-binding protein yckb
- UniProt
- P42400
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable ABC transporter extracellular-binding protein yckb | protein | 251 | 36% helix, 24% strand | P42400 |
| B | Probable ABC transporter extracellular-binding protein yckb | protein | 244 | 35% helix, 25% strand | P42400 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 305 | 0.59 | 0.77 | 39 | empty |
| 2 | 347 | 0.58 | 0.76 | 47 | empty |
Interfaces
1 interface between chains.
- A–B · 539 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 2IEE · Crystal Structure of YCKB_BACSU from Bacillus subtilis. Northeast Structural Genomics… · the same entry in another collection · chain A against A, TM-score 1.00
- P42400 · AlphaFold monomer V2.0 prediction for probable ABC transporter extracellular-binding… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42400
- Elsewhere: RCSB PDB 2IEE · PDBe 2IEE · UniProt P42400
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