MolNFT v1 · #527811 · protein

AlphaFold monomer V2.0 prediction for probable ABC transporter extracellular-binding protein yckb (P42400)

P42400: “AlphaFold monomer V2.0 prediction for probable ABC transporter extracellular-binding protein yckb (P42400)”. 1 pocket (best druggability 0.59). MolNFT v1 #527811 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P42400
Type: protein
Length: 287 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x2E12bb69d787D5a5875B6782fa9a2a1b39dc1D02
Molecule: Probable ABC transporter extracellular-binding protein yckb
UniProt: P42400
Pockets: 1 · best druggability 0.59

Structure

1 distinct chain · 33% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable ABC transporter extracellular-binding protein yckb	protein	287	33% helix, 24% strand	P42400

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	398	0.59	0.75	55	empty

Compared structures

2IEE · Crystal Structure of YCKB_BACSU from Bacillus subtilis. Northeast Structural Genomics… · an experimental structure of the same protein · chain A against A, TM-score 0.86
2IEE · Crystal structure of YCKB_BACSU from bacillus subtilis. northeast structural genomics… · an experimental structure of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P42400
Elsewhere: UniProt P42400 · AlphaFold DB P42400

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